Wetware World

Comparison

WWD against six existing formats

3MF Core, 3MFBio, STEP AP242, STL, SBML and SBOL 3. WWD 0.1 does not replace any of them. It delegates geometry, print process, computational models and genetic constructs to them and states which representation is authoritative.

Formats compared
6
Source
CRITIQUE-VS-3MFBIO.md
WWD status
0.1 draft
Standards body
none

Scope of each format

What it covers, its status, and how a WWD package uses it.

Formats
FormatScopeStatusRelationship to WWD
3MF CoreAdditive manufacturing package: OPC/ZIP container, watertight printable geometry, defined units, extensionsUsed and extensionsRequired refusal semantics.ISO/IEC standardised. Many shipping implementers.WWD delegates geometry to it. A 3MF part may carry authoritative geometry inside a WWD package.
3MFBioXML extension of 3MF for bioprinting and pharmaprinting print jobs. Bioink viscosity, cell viability, material composition, CAS numbers, thermal stability, cartridge type, gauge size, environmental controls, and workflow steps from pre-print mixing to post-print curing. 35 or more defined attributes.Open source, developed by Brinter AM Technologies, under development. Regulatory alignment claimed with ISO 10993 and FDA guidance. One vendor implementer.A WWD protocol step may delegate to a 3MFBio or 3MF part inside the package or to an external asset with integrity.
STEP AP242Product model exchange for mechanical parts: topology, product manufacturing information, tolerances.ISO standardised, in wide industrial use.Named as one of the geometry formats a WWD consumer may support. Where STEP semantics are available they are retained rather than flattened to STL.
STLTriangulated surface shape. No units, no topology semantics, no named regions.De facto, universally read.Permitted as a WWD geometry payload for surface shape. It may not be the sole carrier of units, topology semantics, regions or interfaces.
SBMLSystems biology models: species, reactions, compartments, kinetic laws.Community standard with a large tool ecosystem.A WWD simulation model may reference an SBML asset. WWD carries the model envelope and the run record and does not solve.
SBOL 3Genetic construct design: sequence, features, interactions, construct hierarchy.Community standard, versioned.A genetic construct is referenced through an SBOL document or a stable SBOL identity. WWD does not duplicate SBOL sequence, feature, interaction or construct semantics.

Capability matrix

One row per capability. Read across.

Capability by format
Capability 3MF Core3MFBioSTEP AP242STLSBMLSBOL 3WWD 0.1
ZIP container, units, extension refusal yesyes, inheritednot applicablenonot applicablenot applicableyes
Watertight printable geometry yesyesyessurface onlynonodelegated to 3MF, STEP, glTF, STL or VTK
Bioink and material parameters partialyesnonononodelegated to the protocol
Printer process settings via Production extensionyesnonononodelegated, may be a 3MFBio part
Spatially varying property fields nonononononoyes, five backings and one evaluate contract
Fibre alignment as director plus order parameter nonononononoyes, with tensor conversion
Biological identity via CL, NCBITaxon, Cellosaurus nopartialnononopartial, sequence identityyes, delegated and required
Genetic construct semantics nononononoyesreferenced, never duplicated
Reaction network and kinetic model nonononoyesnoreferenced as a delegated model asset
Statistical acceptance criteria with assay method nonononononoyes, closed vocabulary
Yield as a first-class parameter nonononononoyes
As-built measured results linked to criteria nonononononoyes, derived rather than flagged
PROV lineage from cell bank to lot to specimen nonononononoyes
Validity window, time as part of identity nonononononoyes
Control against response, the causal axis nonononononoyes
Non-printed modalities such as MEA culture and organoid nononononot applicablenot applicableyes
Manufacturability design rules nonotolerancingnononoyes, 11 rules
Regulatory alignment not applicableclaimed, ISO 10993 and FDAnot applicablenot applicablenot applicablenot applicablenone
Standards body ISO/IECnoneISOnonecommunitycommunitynone
Shipping implementers manyone vendormanymanymanyseveralone repository

Two different questions

The models differ before the feature lists do.

The 3MF causal model is the additive-manufacturing model: instructions go to a machine, the machine deposits material, the artifact matches the model, and deviation is machine error. 3MFBio extends the parameter half of that model with bioink and cartridge description. That model holds for the deposition step.

A printed construct is seeded rather than finished when the printhead stops. Fusion, alignment, matrix remodelling, network formation and maturation follow, and the printer does not cause them. 3MFBio can state an extrusion at 22 degC through a 25 G nozzle at 12 mm per second. It has no slot for a fibre alignment target of S greater than or equal to 0.65 by day 14 measured by structure tensor over 5 fields, for a median twitch force criterion at n = 12, for the distinction between a value the producer set and a value the tissue produced, or for what a lot measured.

3MFBio answers how a print job is reproduced on another machine. WWD answers what living component is being ordered, how both parties will know it worked, and what the build measured. A bioprinted WWD component delegates its fabrication protocol to a 3MFBio file.

Where the incumbent is ahead

From the critique, unchanged.

3MFBio advantages over WWD 0.1
AreaPosition
Regulatory alignment3MFBio claims alignment with ISO 10993 and FDA guidance. WWD has none. The WWD acceptance-criteria model can carry ISO 10993 assay references, and nobody has mapped them. Recorded as a named gap.
Industry sponsor3MFBio has a vendor shipping bioprinters. WWD has one implementer, the reference repository.
Standardisation3MFBio inherits packaging, geometry, units and extension semantics from ISO/IEC-standardised 3MF. WWD re-derived equivalents and they are not standardised.
Tooling ecosystemlib3mf, slicers and CAD exporters already read the 3MF container. WWD software reads WWD files only.
Shipped attribute list3MFBio ships 35 or more named attributes a vendor can implement. The WWD Core property registry holds 58 terms and registry breadth is deferred.
Schema language3MFBio uses XML and XSD. WWD uses JSON and JSON Schema. The XML question is recorded as closed for 0.1.
Scope3MFBio has a narrower scope and can be completed. The WWD scope is large, and the critique records scope discipline as the top project risk.

The critique records one demonstration of the delegation architecture: bioprinted-strip.wwd carries an embedded 3MF part with integrity and the role opaque, and validates with zero errors and zero warnings.