Wetware World

Example package

Aligned contractile muscle strip, as built

The same strip after a lot was made and tested. The package adds a results document, an assay evidence CSV, and a provenance graph.

File
muscle-strip-asbuilt.wwd
Package size
4231 B
Component kind
contractile_tissue
Design revision
1.3.0

What it describes

The same strip after a lot was made and tested. The package adds a results document, an assay evidence CSV, and a provenance graph.

Readings

  • Each measured result names one criterion tag. The criteria themselves are unchanged from the as-designed package.
  • A yield statement records 12 units tested and 12 meeting AC-001.
  • Context is recorded separately from control and response. Passage number is carried as context.
  • The provenance graph holds 8 entities and 12 edges across expansion, fabrication and assay activities.

Archive entries

Every entry, with its manifest role.

ZIP entries
EntryBytesRoleMedia type
mimetype23(package identity)text/plain
wwd/manifest.json1065manifestapplication/json
wwd/design.json7230designapplication/vnd.wwd.design+json
wwd/results.json5046measured_result_dataapplication/vnd.wwd.results+json
data/twitch.csv92assay_evidencetext/csv

Component

Identity, frame, dimensions and biology.

Aligned contractile muscle strip
Identifiercomponent/muscle-strip
Kindcontractile_tissue
Dimensionslength 12 mm, width 2 mm, thickness 0.3 mm
Frameright-handed, axes x y z, units mm, origin centroid of loop-a bore
Validity windowhours_post_seeding 168 to 336
Geometrynot carried in this package
Populations
RoleCell typeSpeciesDerivation
primary skeletal muscle myoblast CL:0000515 Homo sapiens NCBITaxon:9606 primary
Fields
PropertyCausal roleProvenanceValue
wwd:ecm_stiffness control designed 12 kPa · imposed_by protocol/gel-casting#step-2
wwd:matrix_formulation control designed composition: collagen_i 0.6, fibrin 0.4 · imposed_by protocol/gel-casting#step-1
wwd:seeding_density_volumetric control designed 2.0e7 cells/mL · imposed_by protocol/seeding#step-1
wwd:stimulation_frequency control designed 1 Hz · imposed_by protocol/maturation#e-stim
wwd:fiber_alignment response designed 0.72 1
wwd:peak_twitch_force response designed 550 uN
Interfaces
IdentifierModalityRole
iface/loop-amechanicalattachment_loop
iface/loop-bmechanicalattachment_loop
Regions
IdentifierKind
region/activewhole_component
region/loop-ageometry_subset
region/loop-bgeometry_subset

Acceptance criteria

Measurand, statistic, comparator, limit and method, as written in the design document.

Criteria
TagTitleMeasurand StatisticLimit CriticalityAxis Methodn
AC-001 Median twitch force peak_twitch_force median >= 500 uN critical response WWD-TWITCH-001 12
AC-002 Twitch force consistency peak_twitch_force cv <= 0.2 1 major response WWD-TWITCH-001 not stated
AC-003 Alignment floor fiber_alignment median >= 0.65 1 major response WWD-ALIGN-001 not stated
PC-001 Gel stiffness compliance ecm_stiffness value range 11.0 to 13.0 kPa major control WWD-RHEO-001 not stated

Results document

Realization, measured results, yield and lineage.

Realization
Identifier schemelocal
Design revision tested1.3.0
Yield12 of 12 units meeting AC-001
Context recordedwwd:passage_number = 6 1
Provenance graph8 entities, 12 edges
Activity kindsassay, expansion, fabrication
Measured results
CriterionStatusValueStatisticn observedProvenanceCausal role
AC-001 pass 612 uN median 12 measured response
AC-002 pass 0.14 1 cv 12 measured response
AC-003 pass 0.71 1 median 5 measured response
PC-001 pass 12.4 kPa value not stated measured control

A consumer recomputes every verdict from the limit, the statistic and the observed value. The recorded status is not trusted.