Example package
Aligned contractile muscle strip, as built
The same strip after a lot was made and tested. The package adds a results document, an assay evidence CSV, and a provenance graph.
What it describes
The same strip after a lot was made and tested. The package adds a results document, an assay evidence CSV, and a provenance graph.
Readings
- Each measured result names one criterion tag. The criteria themselves are unchanged from the as-designed package.
- A yield statement records 12 units tested and 12 meeting AC-001.
- Context is recorded separately from control and response. Passage number is carried as context.
- The provenance graph holds 8 entities and 12 edges across expansion, fabrication and assay activities.
Archive entries
Every entry, with its manifest role.
| Entry | Bytes | Role | Media type |
|---|---|---|---|
| mimetype | 23 | (package identity) | text/plain |
| wwd/manifest.json | 1065 | manifest | application/json |
| wwd/design.json | 7230 | design | application/vnd.wwd.design+json |
| wwd/results.json | 5046 | measured_result_data | application/vnd.wwd.results+json |
| data/twitch.csv | 92 | assay_evidence | text/csv |
Component
Identity, frame, dimensions and biology.
| Identifier | component/muscle-strip |
|---|---|
| Kind | contractile_tissue |
| Dimensions | length 12 mm, width 2 mm, thickness 0.3 mm |
| Frame | right-handed, axes x y z, units mm, origin centroid of loop-a bore |
| Validity window | hours_post_seeding 168 to 336 |
| Geometry | not carried in this package |
| Role | Cell type | Species | Derivation |
|---|---|---|---|
| primary | skeletal muscle myoblast CL:0000515 | Homo sapiens NCBITaxon:9606 | primary |
| Property | Causal role | Provenance | Value |
|---|---|---|---|
| wwd:ecm_stiffness | control | designed | 12 kPa · imposed_by protocol/gel-casting#step-2 |
| wwd:matrix_formulation | control | designed | composition: collagen_i 0.6, fibrin 0.4 · imposed_by protocol/gel-casting#step-1 |
| wwd:seeding_density_volumetric | control | designed | 2.0e7 cells/mL · imposed_by protocol/seeding#step-1 |
| wwd:stimulation_frequency | control | designed | 1 Hz · imposed_by protocol/maturation#e-stim |
| wwd:fiber_alignment | response | designed | 0.72 1 |
| wwd:peak_twitch_force | response | designed | 550 uN |
| Identifier | Modality | Role |
|---|---|---|
| iface/loop-a | mechanical | attachment_loop |
| iface/loop-b | mechanical | attachment_loop |
| Identifier | Kind |
|---|---|
| region/active | whole_component |
| region/loop-a | geometry_subset |
| region/loop-b | geometry_subset |
Acceptance criteria
Measurand, statistic, comparator, limit and method, as written in the design document.
| Tag | Title | Measurand | Statistic | Limit | Criticality | Axis | Method | n |
|---|---|---|---|---|---|---|---|---|
| AC-001 | Median twitch force | peak_twitch_force | median | >= 500 uN | critical | response | WWD-TWITCH-001 | 12 |
| AC-002 | Twitch force consistency | peak_twitch_force | cv | <= 0.2 1 | major | response | WWD-TWITCH-001 | not stated |
| AC-003 | Alignment floor | fiber_alignment | median | >= 0.65 1 | major | response | WWD-ALIGN-001 | not stated |
| PC-001 | Gel stiffness compliance | ecm_stiffness | value | range 11.0 to 13.0 kPa | major | control | WWD-RHEO-001 | not stated |
Results document
Realization, measured results, yield and lineage.
| Identifier scheme | local |
|---|---|
| Design revision tested | 1.3.0 |
| Yield | 12 of 12 units meeting AC-001 |
| Context recorded | wwd:passage_number = 6 1 |
| Provenance graph | 8 entities, 12 edges |
| Activity kinds | assay, expansion, fabrication |
| Criterion | Status | Value | Statistic | n observed | Provenance | Causal role |
|---|---|---|---|---|---|---|
| AC-001 | pass | 612 uN | median | 12 | measured | response |
| AC-002 | pass | 0.14 1 | cv | 12 | measured | response |
| AC-003 | pass | 0.71 1 | median | 5 | measured | response |
| PC-001 | pass | 12.4 kPa | value | not stated | measured | control |
A consumer recomputes every verdict from the limit, the statistic and the observed value. The recorded status is not trusted.
- The other example packages.
- The Core registries: every property term, assay and closed vocabulary.
- The .wwd file format reference.