Example package
NeuronTile, MEA-ready cortical culture
A 24 by 24 mm neural culture on a microelectrode array, built and tested. Two iPSC-derived populations, three interfaces, five criteria.
What it describes
A 24 by 24 mm neural culture on a microelectrode array, built and tested. Two iPSC-derived populations, three interfaces, five criteria.
Readings
- The same field, criterion and result machinery applies to a component that is not printed and has no bulk geometry.
- Two populations are declared with distinct biological roles, both from Homo sapiens.
- Electrical recording, electrical stimulation and optical imaging access are separate interfaces on one component.
- The yield statement records 8 units tested and 7 meeting NT-001.
- The provenance graph holds 22 entities and 41 edges, including split and pooling activities.
Archive entries
Every entry, with its manifest role.
| Entry | Bytes | Role | Media type |
|---|---|---|---|
| mimetype | 23 | (package identity) | text/plain |
| wwd/manifest.json | 864 | manifest | application/json |
| wwd/design.json | 8595 | design | application/vnd.wwd.design+json |
| wwd/results.json | 9659 | measured_result_data | application/vnd.wwd.results+json |
Component
Identity, frame, dimensions and biology.
| Identifier | component/neuron-tile |
|---|---|
| Kind | neural_culture |
| Dimensions | length 24 mm, width 24 mm, thickness 0.15 mm |
| Frame | right-handed, axes x y z, units mm, origin substrate center |
| Validity window | days_in_vitro 21 to 42 |
| Geometry | not carried in this package |
| Role | Cell type | Species | Derivation |
|---|---|---|---|
| primary | glutamatergic neuron CL:0000679 | Homo sapiens NCBITaxon:9606 | ipsc_derived |
| support | astrocyte CL:0000127 | Homo sapiens NCBITaxon:9606 | ipsc_derived |
| Property | Causal role | Provenance | Value |
|---|---|---|---|
| wwd:seeding_density_areal | control | designed | 1500 cells/mm2 · imposed_by protocol/plating#step-3 |
| wwd:medium_formulation | control | designed | 1 1 · imposed_by protocol/feeding#schedule |
| wwd:active_electrode_fraction | response | designed | 0.80 1 |
| wwd:mean_firing_rate | response | designed | 2.5 Hz |
| wwd:network_burst_rate | response | designed | 0.15 Hz |
| Identifier | Modality | Role |
|---|---|---|
| iface/mea | electrical | recording |
| iface/stim | electrical | stimulation |
| iface/optical | optical | imaging_access |
| Identifier | Kind |
|---|---|
| region/active-culture | whole_component |
| region/electrode-array | geometry_subset |
Acceptance criteria
Measurand, statistic, comparator, limit and method, as written in the design document.
| Tag | Title | Measurand | Statistic | Limit | Criticality | Axis | Method | n |
|---|---|---|---|---|---|---|---|---|
| NT-001 | Active electrode fraction | active_electrode_fraction | proportion | >= 0.8 1 | critical | response | WWD-MEA-001 | not stated |
| NT-002 | Mean firing rate floor | mean_firing_rate | median | >= 0.1 Hz | critical | response | WWD-MEA-001 | not stated |
| NT-003 | Network burst rate | network_burst_rate | median | >= 0.0167 Hz | critical | response | WWD-BURST-001 | not stated |
| NT-004 | Network burst participation | electrodes_in_network_burst | proportion | >= 0.25 1 | critical | response | WWD-BURST-001 | not stated |
| NT-006 | Culture age at ship | days_in_vitro | value | range 28 to 35 d | critical | control | WWD-DIV-001 | not stated |
Results document
Realization, measured results, yield and lineage.
| Identifier scheme | local |
|---|---|
| Design revision tested | 0.4.0 |
| Yield | 7 of 8 units meeting NT-001 |
| Context recorded | wwd:source_line = CVCL_1E52, wwd:days_in_vitro = 28 1 |
| Provenance graph | 22 entities, 41 edges |
| Activity kinds | differentiation, expansion, pooling, split |
| Criterion | Status | Value | Statistic | n observed | Provenance | Causal role |
|---|---|---|---|---|---|---|
| NT-001 | pass | 0.87 1 | proportion | 60 | measured | response |
| NT-002 | pass | 3.1 Hz | median | 52 | measured | response |
| NT-003 | pass | 0.11 Hz | median | not stated | measured | response |
| NT-004 | pass | 0.62 1 | proportion | 60 | measured | response |
| NT-006 | pass | 30 d | value | not stated | measured | control |
A consumer recomputes every verdict from the limit, the statistic and the observed value. The recorded status is not trusted.
- The other example packages.
- The Core registries: every property term, assay and closed vocabulary.
- The .wwd file format reference.